AllMine is a flexible allele mining pipeline. AllMine can handle various NGS data types (WGS, RRGS, RNAseq, paired/single end layouts…) and process all steps from raw reads to de novo SNPs phasing and annotation. Designed for easy usage, AllMine can be use by non bioinformaticians. AllMine is HPC compatible via Slurm.
AllMine was developed at INRA’s PACA GAFL unit. For more informations on our lab, please visit our web page.
Follow AllMine development on GitHub.
- Quick Start guide
- AllMine outputs
- Modules documentation
- Licence and contact